Tree

java.lang.Object
- de.grogra.graph.impl.Edge
- - de.grogra.graph.impl.Node
  - - de.grogra.lignum.stlLignum.TreeCompartment
    - - de.grogra.lignum.stlLignum.Tree

All Implemented Interfaces:

Manageable, PersistenceCapable, Shareable, UserFields, XObject, Map, java.io.Serializable
```
public class Tree
extends TreeCompartment
```
Translated from orignal C++ Lignum code.

Author:

Alexander Brinkmann

See Also:
Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class de.grogra.graph.impl.Node
  Node.AccessorBridge, Node.FieldAttributeAccessor, Node.NType
- Nested classes/interfaces inherited from interface de.grogra.util.Map
  Map.Chain

Field Summary

Fields
Modifier and Type	Field and Description
`static Node.NType`	`$TYPE`
`protected FirmamentWithMask`	`f`
`protected TreeParameters`	`parameters`
`protected double`	`Treelambda` Variable to balance carbon balance equation
`static Node.NType.Field`	`Treelambda$FIELD`
`protected double`	`Treelb` Longest branch
`protected double`	`TreeM` Tree level respiration
`protected double`	`TreeP` Tree level photosynthesis
`protected double`	`TreeQinMax` Max Qin of all segments in a tree
`protected double`	`TreeRefRadiation` Variable that is used as reference radiation in calculations in tree (e.g. length growth)
`protected double`	`TreeWr` Root mass

Fields inherited from class de.grogra.lignum.stlLignum.TreeCompartment
direction, direction$FIELD, LGAage, LGAage$FIELD, LGAAs, LGAAs$FIELD, point, point$FIELD, tree

Fields inherited from class de.grogra.graph.impl.Node
ADDITIONAL_FIELDS, bits, DELETED, EXTENT_BIT, EXTENT_MASK, extentIndex$FIELD, extentTail$FIELD, HAS_OBSERVERS, IS_INTERPRETIVE, isInterpretive$FIELD, LAST_EXTENT_INDEX, layer$FIELD, MARK, mark$FIELD, MIME_TYPE, MIN_UNUSED_SPECIAL_OF_SOURCE, MIN_UNUSED_SPECIAL_OF_TARGET, name$FIELD, USED_BITS

Fields inherited from interface de.grogra.util.Map
DEFAULT_VALUE, EMPTY_MAP

Constructor Summary

Constructors
Constructor and Description

Tree()

Tree(TreeParameters parameters)

Constructors
Constructor and Description
`Tree()`
`Tree(TreeParameters parameters)`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`forEachDumpCFTreeFunctor(Tree tree, DumpCFTreeFunctor s_e)`
`void`	`forEachEvaluateRadiationForCfTreeSegmentForest(Tree tree, EvaluateRadiationForCfTreeSegmentForest f_e)`
`void`	`forEachShadingEffectOfCfTreeSegment(Tree tree, ShadingEffectOfCfTreeSegment s_e)`
`ParametricCurve`	`getLGMAL()`
`ParametricCurve`	`getLGMFM()`
`ParametricCurve`	`getLGMIP()`
`ParametricCurve`	`getLGMLONB()`
`ParametricCurve`	`getLGMNB()`
`ParametricCurve`	`getLGMVI()`
`ParametricCurve`	`getLGMVIONB()`
`double`	`getLGPaf()`
`double`	`getLGPaleafmax()`
`double`	`getLGPapical()`
`double`	`getLGPar()`
`double`	`getLGPdof()`
`double`	`getLGPlenRandom()`
`double`	`getLGPLmin()`
`double`	`getLGPlr()`
`double`	`getLGPmf()`
`double`	`getLGPmr()`
`double`	`getLGPms()`
`double`	`getLGPna()`
`double`	`getLGPnl()`
`double`	`getLGPpr()`
`double`	`getLGPq()`
`double`	`getLGPrho_hair()`
`double`	`getLGPrho_root()`
`double`	`getLGPrhoW()`
`double`	`getLGPsf()`
`double`	`getLGPsr()`
`double`	`getLGPss()`
`double`	`getLGPtauL()`
`double`	`getLGPxi()`
`double`	`getLGPyc()`
`double`	`getLGPzbrentEpsilon()`
`protected Node.NType`	`getNTypeImpl()` This method returns the `Node.NType` which describes the managed fields of the class of this node.
`double`	`getTreelambda()`
`double`	`getTreeM()`
`double`	`getTreeP()`
`double`	`getTreeQinMax()`
`double`	`getTreeWr()`
`protected Node`	`newInstance()` This method returns a new instance of the class of this node.
`void`	`setLGMAL(ParametricCurve value)`
`void`	`setLGMFM(ParametricCurve value)`
`void`	`setLGMIP(ParametricCurve value)`
`void`	`setLGMLONB(ParametricCurve value)`
`void`	`setLGMNB(ParametricCurve value)`
`void`	`setLGMVI(ParametricCurve value)`
`void`	`setLGMVIONB(ParametricCurve value)`
`void`	`setLGPna(double value)`
`void`	`setLGPnl(double value)`
`void`	`setTreelambda(double value)`
`void`	`setTreeM(double value)`
`void`	`setTreeP(double value)`
`void`	`setTreeQinMax(double value)`
`void`	`setTreeWr(double value)`

Methods inherited from class de.grogra.lignum.stlLignum.TreeCompartment
getDirection, getLGAage, getLGAAs, getPoint, getTree, setDirection, setLGAage, setLGAAs, setPoint

Methods inherited from class de.grogra.graph.impl.Node
addEdgeBitsTo, addReference, appendBranchNode, appendBranchNode, appendReferencesTo, clone, clone, cloneGraph, dump, dumpTree, dup, dupUnmanagedFields, edgeChanged, fieldModified, findAdjacent, findRefinementType, get, getAccessor, getAccessor, getAttributes, getAxisParent, getBoolean, getBranch, getBranchLength, getBranchNode, getBranchTail, getByte, getChar, getCommonAncestor, getCurrentGraphState, getDirectChildCount, getDouble, getEdgeAttributeAccessor, getEdgeAttributes, getEdgeBitsTo, getEdgeTo, getExtentIndex, getFirst, getFirstEdge, getFloat, getGraph, getId, getIndex, getInstantiator, getInt, getLayer, getLong, getManageableType, getName, getNeighbor, getNext, getNType, getObject, getOrCreateEdgeTo, getOrNull, getPersistenceManager, getPredecessor, getProvider, getShort, getSource, getStamp, getSuccessor, getSymbol, getSymbolColor, getTarget, getTransaction, getUserField, getUserFieldCount, getXClass, getXData, hasName, initProvider, initXClass, insertBranchNode, insertBranchNode, instantiateGraph, isAncestorOf, isDirection, isEncoarseOf, isManagingInstance, isMarked, isRoot, isSource, isTarget, manageableReadResolve, manageableWriteReplace, paramString, removeAll, removeEdgeBitsTo, removeFromChain, removeFromChain, removeReference, setBranch, setBranch, setExtentIndex, setGraphForDeserialization, setLayer, setMark, setName, setSuccessor, setSuccessor, specialEdgeAdded, specialEdgeRefModified, specialEdgeRemoved, toString, writeReplace

Methods inherited from class de.grogra.graph.impl.Edge
addEdgeBits, getBitMark, getEdgeBits, getObjectMark, getSpecialEdgeDescriptor, parseEdgeKeys, remove, removeEdgeBits, setBitMark, setEdgeBits, setObjectMark, testEdgeBits

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.grogra.persistence.PersistenceCapable
getBitMark, getObjectMark, setBitMark, setObjectMark

Field Detail

$TYPE
```
public static final Node.NType $TYPE
```

f
```
protected FirmamentWithMask f
```

parameters
```
protected TreeParameters parameters
```

Treelambda
```
protected double Treelambda
```
Variable to balance carbon balance equation

Treelambda$FIELD

public static final Node.NType.Field Treelambda$FIELD

Treelb
```
protected double Treelb
```
Longest branch

TreeM
```
protected double TreeM
```
Tree level respiration

TreeP
```
protected double TreeP
```
Tree level photosynthesis

TreeQinMax
```
protected double TreeQinMax
```
Max Qin of all segments in a tree

TreeRefRadiation
```
protected double TreeRefRadiation
```
Variable that is used as reference radiation in calculations in tree (e.g. length growth)

TreeWr
```
protected double TreeWr
```
Root mass

Constructor Detail

Tree
```
public Tree()
```

Tree

public Tree(TreeParameters parameters)

Method Detail

forEachDumpCFTreeFunctor

public void forEachDumpCFTreeFunctor(Tree tree,
                            DumpCFTreeFunctor s_e)

forEachEvaluateRadiationForCfTreeSegmentForest

public void forEachEvaluateRadiationForCfTreeSegmentForest(Tree tree,
                                                  EvaluateRadiationForCfTreeSegmentForest f_e)

forEachShadingEffectOfCfTreeSegment

public void forEachShadingEffectOfCfTreeSegment(Tree tree,
                                       ShadingEffectOfCfTreeSegment s_e)

getLGMAL
```
public ParametricCurve getLGMAL()
```

getLGMFM
```
public ParametricCurve getLGMFM()
```

getLGMIP
```
public ParametricCurve getLGMIP()
```

getLGMLONB
```
public ParametricCurve getLGMLONB()
```

getLGMNB
```
public ParametricCurve getLGMNB()
```

getLGMVI
```
public ParametricCurve getLGMVI()
```

getLGMVIONB
```
public ParametricCurve getLGMVIONB()
```

getLGPaf
```
public double getLGPaf()
```

getLGPaleafmax
```
public double getLGPaleafmax()
```

getLGPapical
```
public double getLGPapical()
```

getLGPar
```
public double getLGPar()
```

getLGPdof
```
public double getLGPdof()
```

getLGPlenRandom
```
public double getLGPlenRandom()
```

getLGPLmin
```
public double getLGPLmin()
```

getLGPlr
```
public double getLGPlr()
```

getLGPmf
```
public double getLGPmf()
```

getLGPmr
```
public double getLGPmr()
```

getLGPms
```
public double getLGPms()
```

getLGPna
```
public double getLGPna()
```

getLGPnl
```
public double getLGPnl()
```

getLGPpr
```
public double getLGPpr()
```

getLGPq
```
public double getLGPq()
```

getLGPrho_hair
```
public double getLGPrho_hair()
```

getLGPrho_root
```
public double getLGPrho_root()
```

getLGPrhoW
```
public double getLGPrhoW()
```

getLGPsf
```
public double getLGPsf()
```

getLGPsr
```
public double getLGPsr()
```

getLGPss
```
public double getLGPss()
```

getLGPtauL
```
public double getLGPtauL()
```

getLGPxi
```
public double getLGPxi()
```

getLGPyc
```
public double getLGPyc()
```

getLGPzbrentEpsilon
```
public double getLGPzbrentEpsilon()
```

getNTypeImpl
```
protected Node.NType getNTypeImpl()
```
Description copied from class: Node

This method returns the Node.NType which describes the managed fields of the class of this node. This method has to be implemented in every concrete subclass.

Overrides:

getNTypeImpl in class TreeCompartment

Returns:
type describing the managed fields of the class of this node

getTreelambda
```
public double getTreelambda()
```

getTreeM
```
public double getTreeM()
```

getTreeP
```
public double getTreeP()
```

getTreeQinMax
```
public double getTreeQinMax()
```

getTreeWr
```
public double getTreeWr()
```

newInstance
```
protected Node newInstance()
```
Description copied from class: Node

This method returns a new instance of the class of this node. This method has to be implemented in every concrete subclass.

Overrides:

newInstance in class TreeCompartment

Returns:
new instance of class of this node

setLGMAL

public void setLGMAL(ParametricCurve value)

setLGMFM

public void setLGMFM(ParametricCurve value)

setLGMIP

public void setLGMIP(ParametricCurve value)

setLGMLONB

public void setLGMLONB(ParametricCurve value)

setLGMNB

public void setLGMNB(ParametricCurve value)

setLGMVI

public void setLGMVI(ParametricCurve value)

setLGMVIONB

public void setLGMVIONB(ParametricCurve value)

setLGPna
```
public void setLGPna(double value)
```

setLGPnl
```
public void setLGPnl(double value)
```

setTreelambda

public void setTreelambda(double value)

setTreeM
```
public void setTreeM(double value)
```

setTreeP
```
public void setTreeP(double value)
```

setTreeQinMax

public void setTreeQinMax(double value)

setTreeWr
```
public void setTreeWr(double value)
```

Class Tree

Nested Class Summary

Nested classes/interfaces inherited from class de.grogra.graph.impl.Node

Nested classes/interfaces inherited from interface de.grogra.util.Map

Field Summary

Fields inherited from class de.grogra.lignum.stlLignum.TreeCompartment

Fields inherited from class de.grogra.graph.impl.Node

Fields inherited from interface de.grogra.util.Map

Constructor Summary

Method Summary

Methods inherited from class de.grogra.lignum.stlLignum.TreeCompartment

Methods inherited from class de.grogra.graph.impl.Node

Methods inherited from class de.grogra.graph.impl.Edge

Methods inherited from class java.lang.Object

Methods inherited from interface de.grogra.persistence.PersistenceCapable

Field Detail

$TYPE

f

parameters

Treelambda

Treelambda$FIELD

Treelb

TreeM

TreeP

TreeQinMax

TreeRefRadiation

TreeWr

Constructor Detail

Tree

Tree

Method Detail

forEachDumpCFTreeFunctor

forEachEvaluateRadiationForCfTreeSegmentForest

forEachShadingEffectOfCfTreeSegment

getLGMAL

getLGMFM

getLGMIP

getLGMLONB

getLGMNB

getLGMVI

getLGMVIONB

getLGPaf

getLGPaleafmax

getLGPapical

getLGPar

getLGPdof

getLGPlenRandom

getLGPLmin

getLGPlr

getLGPmf

getLGPmr

getLGPms

getLGPna

getLGPnl

getLGPpr

getLGPq

getLGPrho_hair

getLGPrho_root

getLGPrhoW

getLGPsf

getLGPsr

getLGPss

getLGPtauL

getLGPxi

getLGPyc

getLGPzbrentEpsilon

getNTypeImpl

getTreelambda

getTreeM

getTreeP

getTreeQinMax

getTreeWr

newInstance

setLGMAL

setLGMFM

setLGMIP

setLGMLONB

setLGMNB

setLGMVI

setLGMVIONB