jgromacs.db

Class ResidueType

java.lang.Object

jgromacs.db.ResidueType

All Implemented Interfaces:

java.lang.Cloneable

public class ResidueType
extends java.lang.Object
implements java.lang.Cloneable

Objects of this class represent a residue type

Constructor Summary

Constructors

Constructor and Description
ResidueType() Constructs a new ResidueType object
ResidueType(int type) Constructs a new ResidueType object of a given type
ResidueType(java.lang.String code) Constructs a new ResidueType object of given code

Method Summary

Modifier and Type	Method and Description
java.lang.Object	clone() Returns an identical ResidueType object
boolean	equals(java.lang.Object other) Returns true if the two residue types are identical
java.lang.String	get1LetterCode() Returns 1 letter code of residue type
java.lang.String	get3LetterCode() Returns 3 letter code of residue type
java.lang.String	getFullName() Returns full name of residue type
int	hashCode() Returns hash code
boolean	isAminoAcid() Returns true if it is an amino acid (not water or else)
boolean	isOther() Returns true if it is not an amino acid nor water
boolean	isWater() Returns true if it is water (not amino acid or else)
java.lang.String	toString() Returns the String representation of residue type

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

ResidueType

public ResidueType()

Constructs a new ResidueType object

ResidueType

public ResidueType(int type)

Constructs a new ResidueType object of a given type

Parameters:

type - residue type

ResidueType

public ResidueType(java.lang.String code)

Constructs a new ResidueType object of given code

Parameters:

code - residue code

Method Detail

get1LetterCode

public java.lang.String get1LetterCode()

Returns 1 letter code of residue type

Returns:

residue code

get3LetterCode

public java.lang.String get3LetterCode()

Returns 3 letter code of residue type

Returns:

residue code

getFullName

public java.lang.String getFullName()

Returns full name of residue type

Returns:

residue name

isAminoAcid

public boolean isAminoAcid()

Returns true if it is an amino acid (not water or else)

isWater

public boolean isWater()

Returns true if it is water (not amino acid or else)

isOther

public boolean isOther()

Returns true if it is not an amino acid nor water

toString

public java.lang.String toString()

Returns the String representation of residue type

Overrides:

toString in class java.lang.Object

Returns:

String representation

clone

public java.lang.Object clone()

Returns an identical ResidueType object

Overrides:

clone in class java.lang.Object

Returns:

clone of the residue type

equals

public boolean equals(java.lang.Object other)

Returns true if the two residue types are identical

Overrides:

equals in class java.lang.Object

Parameters:

other - the other residue type

hashCode

public int hashCode()

Returns hash code

Overrides:

hashCode in class java.lang.Object